Contains metadata about all the genomes available in UCSC. It contains
derived metadata, such as the effective genome sizes as well. See also
the data-raw/available_genomes.R script to see processing steps.
available_genomesAn object of class data.frame with 199 rows and 27 columns.
available_genomes is a data.frame with the following columns:
UCSC_orgID
Official UCSC ID of the genome
description
Verbose description of the assembly, source, and year/month of entry.
nibPath
Endpoint of the genome in UCSC gbdb.
organism
Name of the organism.
defaultPos
Default location of genome browser view for this genome.
active
Description not available.
orderKey
Description not available.
genome
The name of the genome.
scientificName
The scientific name of the organism.
htmlPath
Path in UCSC gbdb to the description.html file for the genome.
hgNearOk
Description not available.
hgPbOk
Description not available.
sourceName
Name of organization providing the genome.
taxId
The taxonomy ID of the organism.
genes_available
If TRUE, the gene annotations are available in GTF format.
year
The year the genome assembly was added.
eff_genome_size_XXbp
The effective genome size of this genome. Calculated at various read
lengths with khmer
and used to improve the accuracy of analysis. See
the data-raw/available_genomes.R script to see how this calculation
was performed.
genome_length
The total length of the genome.
rlfs_available
If TRUE, R-loop forming sequences annotations are available in the
RLBase AWS S3 repository.
available_genomes
#> UCSC_orgID description nibPath
#> 1 ailMel1 Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) /gbdb/ailMel1
#> 2 allMis1 Aug. 2012 (allMis0.2/allMis1) /gbdb/allMis1
#> 3 anoCar1 Feb. 2007 (Broad/anoCar1) /gbdb/anoCar1
#> 4 anoCar2 May 2010 (Broad AnoCar2.0/anoCar2) /gbdb/anoCar2
#> 5 anoGam1 Feb. 2003 (IAGEC MOZ2/anoGam1) /gbdb/anoGam1/nib
#> 6 anoGam3 Oct. 2006 (AgamP3/anoGam3) /gbdb/anoGam3
#> 7 apiMel1 July 2004 (Baylor 1.2/apiMel1) /gbdb/apiMel1
#> 8 apiMel2 Jan. 2005 (Baylor 2.0/apiMel2) /gbdb/apiMel2
#> 9 aplCal1 Sept. 2008 (Broad 2.0/aplCal1) /gbdb/aplCal1
#> 10 aptMan1 Jun. 2015 (MPI-EVA AptMant0/aptMan1) /gbdb/aptMan1
#> 11 aquChr2 Oct. 2014 (aquChr-1.0.2/aquChr2) /gbdb/aquChr2
#> 12 balAcu1 Oct. 2013 (BalAcu1.0/balAcu1) /gbdb/balAcu1
#> 13 bisBis1 Oct. 2014 (Bison_UMD1.0/bisBis1) /gbdb/bisBis1
#> 14 bosTau2 Mar. 2005 (Baylor 2.0/bosTau2) /gbdb/bosTau2
#> 15 bosTau3 Aug. 2006 (Baylor 3.1/bosTau3) /gbdb/bosTau3
#> 16 bosTau4 Oct. 2007 (Baylor 4.0/bosTau4) /gbdb/bosTau4
#> 17 bosTau6 Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) /gbdb/bosTau6
#> 18 bosTau7 Oct. 2011 (Baylor Btau_4.6.1/bosTau7) /gbdb/bosTau7
#> 19 bosTau8 Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) /gbdb/bosTau8
#> 20 bosTau9 Apr. 2018 (ARS-UCD1.2/bosTau9) /gbdb/bosTau9
#> 21 braFlo1 Mar. 2006 (JGI 1.0/braFlo1) /gbdb/braFlo1
#> 22 caeJap1 Mar. 2008 (WUGSC 3.0.2/caeJap1) /gbdb/caeJap1
#> 23 caePb1 Jan. 2007 (WUGSC 4.0/caePb1) /gbdb/caePb1
#> 24 caePb2 Feb. 2008 (WUGSC 6.0.1/caePb2) /gbdb/caePb2
#> 25 caeRem2 Mar. 2006 (WUGSC 1.0/caeRem2) /gbdb/caeRem2
#> 26 caeRem3 May 2007 (WUGSC 15.0.1/caeRem3) /gbdb/caeRem3
#> 27 calJac1 June 2007 (WUGSC 2.0.2/calJac1) /gbdb/calJac1
#> 28 calJac3 March 2009 (WUGSC 3.2/calJac3) /gbdb/calJac3
#> 29 calMil1 Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) /gbdb/calMil1
#> 30 canFam1 July 2004 (Broad/canFam1) /gbdb/canFam1/nib
#> 31 canFam2 May 2005 (Broad/canFam2) /gbdb/canFam2
#> 32 canFam3 Sep. 2011 (Broad CanFam3.1/canFam3) /gbdb/canFam3
#> 33 cavPor3 Feb. 2008 (Broad/cavPor3) /gbdb/cavPor3
#> 34 ce10 Oct. 2010 (WS220/ce10) /gbdb/ce10
#> 35 ce11 Feb. 2013 (WBcel235/ce11) /gbdb/ce11
#> 36 ce2 Mar. 2004 (WS120/ce2) /gbdb/ce2/nib
#> 37 ce6 May 2008 (WS190/ce6) /gbdb/ce6
#> 38 cerSim1 May 2012 (CerSimSim1.0/cerSim1) /gbdb/cerSim1
#> 39 chlSab2 Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) /gbdb/chlSab2
#> 40 choHof1 Jul. 2008 (Broad/choHof1) /gbdb/choHof1
#> 41 chrPic1 Dec. 2011 (v3.0.1/chrPic1) /gbdb/chrPic1
#> 42 ci1 Dec. 2002 (JGI 1.0/ci1) /gbdb/ci1/nib
#> 43 ci2 Mar. 2005 (JGI 2.1/ci2) /gbdb/ci2/nib
#> 44 ci3 Apr. 2011 (Kyoto KH/ci3) /gbdb/ci3
#> 45 criGri1 Jul. 2013 (C_griseus_v1.0/criGri1) /gbdb/criGri1
#> 46 criGriChoV1 Aug. 2011 (CHO K1 cell line/criGriChoV1) /gbdb/criGriChoV1
#> 47 criGriChoV2 Jun. 2017 (CHOK1S_HZDv1/criGriChoV2) /gbdb/criGriChoV2
#> 48 danRer10 Sep. 2014 (GRCz10/danRer10) /gbdb/danRer10
#> 49 danRer11 May 2017 (GRCz11/danRer11) /gbdb/danRer11
#> 50 danRer3 May 2005 (Zv5/danRer3) /gbdb/danRer3
#> 51 danRer4 Mar. 2006 (Zv6/danRer4) /gbdb/danRer4
#> 52 danRer5 July 2007 (Zv7/danRer5) /gbdb/danRer5
#> 53 danRer6 Dec. 2008 (Zv8/danRer6) /gbdb/danRer6
#> 54 danRer7 Jul. 2010 (Zv9/danRer7) /gbdb/danRer7
#> 55 dasNov3 Dec. 2011 (Baylor/dasNov3) /gbdb/dasNov3
#> 56 dipOrd1 Jul. 2008 (Broad/dipOrd1) /gbdb/dipOrd1
#> 57 dm1 Jan. 2003 (BDGP R3/dm1) /gbdb/dm1/nib
#> 58 dm2 Apr. 2004 (BDGP R4/dm2) /gbdb/dm2/nib
#> 59 dm3 Apr. 2006 (BDGP R5/dm3) /gbdb/dm3
#> 60 dm6 Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) /gbdb/dm6
#> 61 dp2 Aug. 2003 (Baylor freeze1/dp2) /gbdb/dp2/nib
#> 62 dp3 Nov. 2004 (FlyBase 1.03/dp3) /gbdb/dp3
#> 63 droAna1 July 2004 (TIGR/droAna1) /gbdb/droAna1
#> 64 droAna2 Aug. 2005 (Agencourt prelim/droAna2) /gbdb/droAna2
#> 65 droEre1 Aug. 2005 (Agencourt prelim/droEre1) /gbdb/droEre1
#> 66 droGri1 Aug. 2005 (Agencourt prelim/droGri1) /gbdb/droGri1
#> 67 droMoj1 Aug. 2004 (Agencourt prelim/droMoj1) /gbdb/droMoj1
#> 68 droMoj2 Aug. 2005 (Agencourt prelim/droMoj2) /gbdb/droMoj2
#> 69 droPer1 Oct. 2005 (Broad/droPer1) /gbdb/droPer1
#> 70 droSec1 Oct. 2005 (Broad/droSec1) /gbdb/droSec1
#> 71 droSim1 Apr. 2005 (WUGSC mosaic 1.0/droSim1) /gbdb/droSim1
#> 72 droVir1 July 2004 (Agencourt prelim/droVir1) /gbdb/droVir1
#> 73 droVir2 Aug. 2005 (Agencourt prelim/droVir2) /gbdb/droVir2
#> 74 droYak1 Apr. 2004 (WUGSC 1.0/droYak1) /gbdb/droYak1/nib
#> 75 droYak2 Nov. 2005 (WUGSC 7.1/droYak2) /gbdb/droYak2
#> 76 eboVir3 Sierra Leone 2014 (G3683/KM034562.1/eboVir3) /gbdb/eboVir3
#> 77 echTel1 July 2005 (Broad/echTel1) /gbdb/echTel1
#> 78 echTel2 Nov. 2012 (Broad/echTel2) /gbdb/echTel2
#> 79 equCab1 Jan. 2007 (Broad/equCab1) /gbdb/equCab1
#> 80 equCab2 Sep. 2007 (Broad/equCab2) /gbdb/equCab2
#> 81 equCab3 Jan. 2018 (EquCab3.0/equCab3) /gbdb/equCab3
#> 82 eriEur1 June 2006 (Broad/eriEur1) /gbdb/eriEur1
#> 83 eriEur2 May 2012 (EriEur2.0/eriEur2) /gbdb/eriEur2
#> 84 felCat3 Mar. 2006 (Broad/felCat3) /gbdb/felCat3
#> 85 felCat4 Dec. 2008 (NHGRI/GTB V17e/felCat4) /gbdb/felCat4
#> 86 felCat5 Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) /gbdb/felCat5
#> 87 felCat8 Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) /gbdb/felCat8
#> 88 felCat9 Nov. 2017 (Felis_catus_9.0/felCat9) /gbdb/felCat9
#> 89 fr1 Aug. 2002 (JGI 3.0/fr1) /gbdb/fr1/nib
#> 90 fr2 Oct. 2004 (JGI 4.0/fr2) /gbdb/fr2
#> 91 fr3 Oct. 2011 (FUGU5/fr3) /gbdb/fr3
#> 92 gadMor1 May 2010 (Genofisk GadMor_May2010/gadMor1) /gbdb/gadMor1
#> 93 galGal2 Feb. 2004 (WUGSC 1.0/galGal2) /gbdb/galGal2/nib
#> 94 galGal3 May 2006 (WUGSC 2.1/galGal3) /gbdb/galGal3
#> 95 galGal4 Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) /gbdb/galGal4
#> 96 galGal5 Dec 2015 (Gallus_gallus-5.0/galGal5) /gbdb/galGal5
#> 97 galGal6 Mar. 2018 (GRCg6a/galGal6) /gbdb/galGal6
#> 98 galVar1 Jun. 2014 (G_variegatus-3.0.2/galVar1) /gbdb/galVar1
#> 99 gasAcu1 Feb. 2006 (Broad/gasAcu1) /gbdb/gasAcu1
#> 100 geoFor1 Apr. 2012 (GeoFor_1.0/geoFor1) /gbdb/geoFor1
#> 101 gorGor3 May 2011 (gorGor3.1/gorGor3) /gbdb/gorGor3
#> 102 gorGor4 Dec 2014 (gorGor4.1/gorGor4) /gbdb/gorGor4
#> 103 gorGor5 Mar. 2016 (GSMRT3/gorGor5) /gbdb/gorGor5
#> 104 hetGla1 Jul. 2011 (BGI HetGla_1.0/hetGla1) /gbdb/hetGla1
#> 105 hetGla2 Jan. 2012 (Broad HetGla_female_1.0/hetGla2) /gbdb/hetGla2
#> 106 hg16 July 2003 (NCBI34/hg16) /gbdb/hg16/nib
#> 107 hg17 May 2004 (NCBI35/hg17) /gbdb/hg17/nib
#> 108 hg19 Feb. 2009 (GRCh37/hg19) /gbdb/hg19
#> 109 hg38 Dec. 2013 (GRCh38/hg38) /gbdb/hg38
#> 110 latCha1 Aug. 2011 (Broad/latCha1) /gbdb/latCha1
#> 111 loxAfr3 Jul. 2009 (Broad/loxAfr3) /gbdb/loxAfr3
#> 112 macEug2 Sep. 2009 (TWGS Meug_1.1/macEug2) /gbdb/macEug2
#> 113 macFas5 Jun. 2013 (Macaca_fascicularis_5.0/macFas5) /gbdb/macFas5
#> 114 manPen1 Aug 2014 (M_pentadactyla-1.1.1/manPen1) /gbdb/manPen1
#> 115 melGal1 Dec. 2009 (TGC Turkey_2.01/melGal1) /gbdb/melGal1
#> 116 melGal5 Nov. 2014 (Turkey_5.0/melGal5) /gbdb/melGal5
#> 117 melUnd1 Sep. 2011 (WUSTL v6.3/melUnd1) /gbdb/melUnd1
#> 118 micMur1 Jul. 2007 (Broad/micMur1) /gbdb/micMur1
#> 119 micMur2 May 2015 (Mouse lemur/micMur2) /gbdb/micMur2
#> 120 mm10 Dec. 2011 (GRCm38/mm10) /gbdb/mm10
#> 121 mm7 Aug. 2005 (NCBI35/mm7) /gbdb/mm7
#> 122 mm9 July 2007 (NCBI37/mm9) /gbdb/mm9
#> 123 monDom1 Oct. 2004 (Broad prelim/monDom1) /gbdb/monDom1
#> 124 musFur1 Apr. 2011 (MusPutFur1.0/musFur1) /gbdb/musFur1
#> 125 myoLuc2 Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) /gbdb/myoLuc2
#> 126 nanPar1 Mar. 2015 (BGI_ZX_2015/nanPar1) /gbdb/nanPar1
#> 127 nasLar1 Nov. 2014 (Charlie1.0/nasLar1) /gbdb/nasLar1
#> 128 nomLeu1 Jan. 2010 (GGSC Nleu1.0/nomLeu1) /gbdb/nomLeu1
#> 129 nomLeu2 Jun. 2011 (GGSC Nleu1.1/nomLeu2) /gbdb/nomLeu2
#> 130 nomLeu3 Oct. 2012 (GGSC Nleu3.0/nomLeu3) /gbdb/nomLeu3
#> 131 ochPri2 Jul. 2008 (Broad/ochPri2) /gbdb/ochPri2
#> 132 ochPri3 May 2012 (OchPri3.0/ochPri3) /gbdb/ochPri3
#> 133 oreNil2 Jan. 2011 (Broad oreNil1.1/oreNil2) /gbdb/oreNil2
#> 134 ornAna1 Mar. 2007 (WUGSC 5.0.1/ornAna1) /gbdb/ornAna1
#> 135 ornAna2 Feb. 2007 (ASM227v2/ornAna2) /gbdb/ornAna2
#> 136 oryCun2 Apr. 2009 (Broad/oryCun2) /gbdb/oryCun2
#> 137 oryLat2 Oct. 2005 (NIG/UT MEDAKA1/oryLat2) /gbdb/oryLat2
#> 138 otoGar3 Mar. 2011 (Broad/otoGar3) /gbdb/otoGar3
#> 139 oviAri1 Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) /gbdb/oviAri1
#> 140 oviAri3 Aug. 2012 (ISGC Oar_v3.1/oviAri3) /gbdb/oviAri3
#> 141 oviAri4 Nov. 2015 (Oar_v4.0/oviAri4) /gbdb/oviAri4
#> 142 panPan1 May 2012 (Max-Planck/panPan1) /gbdb/panPan1
#> 143 panPan2 Aug. 2015 (MPI-EVA panpan1.1/panPan2) /gbdb/panPan2
#> 144 panTro1 Nov. 2003 (CGSC 1.1/panTro1) /gbdb/panTro1/nib
#> 145 panTro3 Oct. 2010 (CGSC 2.1.3/panTro3) /gbdb/panTro3
#> 146 panTro4 Feb. 2011 (CSAC 2.1.4/panTro4) /gbdb/panTro4
#> 147 panTro5 May 2016 (Pan_tro 3.0/panTro5) /gbdb/panTro5
#> 148 panTro6 Jan. 2018 (Clint_PTRv2/panTro6) /gbdb/panTro6
#> 149 papAnu2 Mar. 2012 (Baylor Panu_2.0/papAnu2) /gbdb/papAnu2
#> 150 papAnu4 Apr. 2017 (Panu_3.0/papAnu4) /gbdb/papAnu4
#> 151 papHam1 Nov. 2008 (Baylor Pham_1.0/papHam1) /gbdb/papHam1
#> 152 petMar1 Mar. 2007 (WUGSC 3.0/petMar1) /gbdb/petMar1
#> 153 petMar2 Sep. 2010 (WUGSC 7.0/petMar2) /gbdb/petMar2
#> 154 petMar3 Dec. 2017 (Pmar_germline 1.0/petMar3) /gbdb/petMar3
#> 155 ponAbe2 July 2007 (WUGSC 2.0.2/ponAbe2) /gbdb/ponAbe2
#> 156 ponAbe3 Jan. 2018 (Susie_PABv2/ponAbe3) /gbdb/ponAbe3
#> 157 priPac1 Feb. 2007 (WUGSC 5.0/priPac1) /gbdb/priPac1
#> 158 proCap1 Jul. 2008 (Broad/proCap1) /gbdb/proCap1
#> 159 pteVam1 Jul. 2008 (Broad/pteVam1) /gbdb/pteVam1
#> 160 rheMac10 Feb. 2019 (Mmul_10/rheMac10) /gbdb/rheMac10
#> 161 rheMac2 Jan. 2006 (MGSC Merged 1.0/rheMac2) /gbdb/rheMac2
#> 162 rheMac3 Oct. 2010 (BGI CR_1.0/rheMac3) /gbdb/rheMac3
#> 163 rheMac8 Nov. 2015 (BCM Mmul_8.0.1/rheMac8) /gbdb/rheMac8
#> 164 rhiRox1 Oct. 2014 (Rrox_v1/rhiRox1) /gbdb/rhiRox1
#> 165 rn4 Nov. 2004 (Baylor 3.4/rn4) /gbdb/rn4
#> 166 rn5 Mar. 2012 (RGSC 5.0/rn5) /gbdb/rn5
#> 167 rn6 Jul. 2014 (RGSC 6.0/rn6) /gbdb/rn6
#> 168 sacCer1 Oct. 2003 (SGD/sacCer1) /gbdb/sacCer1/nib
#> 169 sacCer2 June 2008 (SGD/sacCer2) /gbdb/sacCer2
#> 170 sacCer3 Apr. 2011 (SacCer_Apr2011/sacCer3) /gbdb/sacCer3
#> 171 saiBol1 Oct. 2011 (Broad/saiBol1) /gbdb/saiBol1
#> 172 sarHar1 Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) /gbdb/sarHar1
#> 173 sorAra1 June 2006 (Broad/sorAra1) /gbdb/sorAra1
#> 174 sorAra2 Aug. 2008 (Broad/sorAra2) /gbdb/sorAra2
#> 175 speTri2 Nov. 2011 (Broad/speTri2) /gbdb/speTri2
#> 176 strPur1 Apr. 2005 (Baylor 1.1/strPur1) /gbdb/strPur1
#> 177 strPur2 Sep. 2006 (Baylor 2.1/strPur2) /gbdb/strPur2
#> 178 susScr11 Feb. 2017 (Sscrofa11.1/susScr11) /gbdb/susScr11
#> 179 susScr2 Nov. 2009 (SGSC Sscrofa9.2/susScr2) /gbdb/susScr2
#> 180 susScr3 Aug. 2011 (SGSC Sscrofa10.2/susScr3) /gbdb/susScr3
#> 181 taeGut1 Jul. 2008 (WUGSC 3.2.4/taeGut1) /gbdb/taeGut1
#> 182 taeGut2 Feb. 2013 (WashU taeGut324/taeGut2) /gbdb/taeGut2
#> 183 tarSyr1 Aug. 2008 (Broad/tarSyr1) /gbdb/tarSyr1
#> 184 tarSyr2 Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) /gbdb/tarSyr2
#> 185 tetNig1 Feb. 2004 (Genoscope 7/tetNig1) /gbdb/tetNig1/nib
#> 186 tetNig2 Mar. 2007 (Genoscope 8.0/tetNig2) /gbdb/tetNig2
#> 187 thaSir1 Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) /gbdb/thaSir1
#> 188 triMan1 Oct. 2011 (Broad v1.0/triMan1) /gbdb/triMan1
#> 189 tupBel1 Dec. 2006 (Broad/tupBel1) /gbdb/tupBel1
#> 190 turTru2 Oct. 2011 (Baylor Ttru_1.4/turTru2) /gbdb/turTru2
#> 191 vicPac1 Jul. 2008 (Broad/vicPac1) /gbdb/vicPac1
#> 192 vicPac2 Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) /gbdb/vicPac2
#> 193 wuhCor1 Jan. 2020/NC_045512.2 /gbdb/wuhCor1
#> 194 xenLae2 Aug. 2016 (Xenopus_laevis_v2/xenLae2) /gbdb/xenLae2
#> 195 xenTro1 Oct. 2004 (JGI 3.0/xenTro1) /gbdb/xenTro1
#> 196 xenTro2 Aug. 2005 (JGI 4.1/xenTro2) /gbdb/xenTro2
#> 197 xenTro3 Nov. 2009 (JGI 4.2/xenTro3) /gbdb/xenTro3
#> 198 xenTro7 Sep. 2012 (JGI 7.0/xenTro7) /gbdb/xenTro7
#> 199 xenTro9 Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) /gbdb/xenTro9
#> organism defaultPos active
#> 1 Panda GL192818.1:558576-566855 1
#> 2 American alligator JH731472:504271-884586 1
#> 3 Lizard scaffold_72:3056494-3141055 1
#> 4 Lizard chr5:23430070-23476097 1
#> 5 A. gambiae chr2R:6479796-6482329 1
#> 6 A. gambiae chr2R:6479796-6482329 1
#> 7 A. mellifera GroupUn.5651:1001-6000 1
#> 8 A. mellifera GroupUn:47426601-47431800 1
#> 9 Sea hare scaffold_829:133,504-180,407 1
#> 10 Brown kiwi NW_013995860v1:31591035-31601034 1
#> 11 Golden eagle KN265877v1:49183-52524 1
#> 12 Minke whale KI537194:1947619-1969416 1
#> 13 Bison KN265006v1:10821934-10865801 1
#> 14 Cow SCAFFOLD10671:4650-8779 1
#> 15 Cow chr28:550,588-553,344 1
#> 16 Cow chr3:21083267-21232422 1
#> 17 Cow chr3:21,592,157-21,596,916 1
#> 18 Cow chr22:56,647,062-58,290,728 1
#> 19 Cow chr1:2772575-2921534 1
#> 20 Cow chr6:85405597-85664387 1
#> 21 Lancelet chrUn:619013791-619054719 1
#> 22 C. japonica chrUn:36686834-36727776 1
#> 23 C. brenneri chrUn:97956213-97960870 1
#> 24 C. brenneri chrUn:117559143-117563800 1
#> 25 C. remanei chrUn:103531185-103538203 1
#> 26 C. remanei chrUn:119043304-119068959 1
#> 27 Marmoset Contig614:446,042-454,396 1
#> 28 Marmoset chr15:67439781-67471107 1
#> 29 Elephant shark KI635875:1934002-2090480 1
#> 30 Dog chr14:10666612-10673232 1
#> 31 Dog chr14:11072309-11078928 1
#> 32 Dog chr14:8114295-8120760 1
#> 33 Guinea pig scaffold_15:19047434-19048046 1
#> 34 C. elegans chrII:14646301-14667800 1
#> 35 C. elegans chrII:14646376-14667875 1
#> 36 C. elegans chrII:14642289-14671631 1
#> 37 C. elegans chrII:14646344-14667746 1
#> 38 White rhinoceros JH767724:13224473-13745226 1
#> 39 Green monkey chr17:59951119-60172671 1
#> 40 Sloth scaffold_5701:20408-28976 1
#> 41 Painted turtle JH584429:9332958-10048518 1
#> 42 C. intestinalis Scaffold_490:1-51949 1
#> 43 C. intestinalis chr01p:3,108,502-3,170,702 1
#> 44 C. intestinalis chr1:5020502-5030501 1
#> 45 Chinese hamster KE382584:3834159-3887734 1
#> 46 Chinese hamster NW_003613923v1:714339-726966 1
#> 47 Chinese hamster LT883664v1:74,691,929-74,715,718 1
#> 48 Zebrafish chr10:33840892-34129251 1
#> 49 Zebrafish chr6:43426669-43433274 1
#> 50 Zebrafish chr13:15,409,989-15,425,511 1
#> 51 Zebrafish chr13:16,747,248-16,763,118 1
#> 52 Zebrafish chr13:14,786,820-14,801,993 1
#> 53 Zebrafish chr13:25,051,748-25,071,333 1
#> 54 Zebrafish chr13:25004825-25082273 1
#> 55 Armadillo JH564832:1503619-1555676 1
#> 56 Kangaroo rat scaffold_7358:2192-33995 1
#> 57 D. melanogaster chr2L:827700-845800 1
#> 58 D. melanogaster chr2L:825964-851061 1
#> 59 D. melanogaster chr2L:826001-851000 1
#> 60 D. melanogaster chr2L:826,001-851,000 1
#> 61 D. pseudoobscura Contig1006_Contig943:3363975-3378814 1
#> 62 D. pseudoobscura chr4_group3:5603001-5614000 1
#> 63 D. ananassae 2448876:2700001-2725000 1
#> 64 D. ananassae scaffold_12916:2717000-2741384 1
#> 65 D. erecta scaffold_4929:882464-907886 1
#> 66 D. grimshawi scaffold_24862:854980-869643 1
#> 67 D. mojavensis contig_2959:30001-44626 1
#> 68 D. mojavensis scaffold_6500:23838548-23875233 1
#> 69 D. persimilis super_1:7109001-7125000 1
#> 70 D. sechellia super_14:795001-815000 1
#> 71 D. simulans chr2L:827,150-853,526 1
#> 72 D. virilis scaffold_6:5128001-5158000 1
#> 73 D. virilis scaffold_12963:19375824-19416317 1
#> 74 D. yakuba chr2L:827700-845800 1
#> 75 D. yakuba chr2L:809001-825000 1
#> 76 Ebola virus KM034562v1:1-18957 1
#> 77 Tenrec scaffold_287419:9706-28119 1
#> 78 Tenrec JH980304:37472293-37479623 1
#> 79 Horse chr11:51,777,319-51,834,862 1
#> 80 Horse chr11:52,970,942-53,028,811 1
#> 81 Horse chr11:53320263-53382039 1
#> 82 Hedgehog scaffold_373857:3457-13237 1
#> 83 Hedgehog JH835538:1253255-1266498 1
#> 84 Cat scaffold_216010:162,840-178,893 1
#> 85 Cat chrA2:64650765-64656835 1
#> 86 Cat chrA2:53225502-53231571 1
#> 87 Cat chrA2:53484451-53597660 1
#> 88 Cat chrA2:53333898-53447862 1
#> 89 Fugu chrUn:148538552-148543911 1
#> 90 Fugu chrUn:29305920-29330760 1
#> 91 Fugu chr21:5807962-5832802 1
#> 92 Atlantic cod HE567617:3931-7549 1
#> 93 Chicken chr13:13120186-13124117 1
#> 94 Chicken chr5:57710001-57780000 1
#> 95 Chicken chr1:51849854-51853553 1
#> 96 Chicken chr4:45985744-45991655 1
#> 97 Chicken chr4:45667317-45670831 1
#> 98 Malayan flying lemur NW_007732982v1:59339-77043 1
#> 99 Stickleback chrI:14092957-14102956 1
#> 100 Medium ground finch JH739914:135428-435957 1
#> 101 Gorilla chr1:114753601-114763600 1
#> 102 Gorilla chr5:6996937-7026323 1
#> 103 Gorilla CYUI01014949v1:16861488-16905480 1
#> 104 Naked mole-rat JH169644:999,819-1,006,151 1
#> 105 Naked mole-rat JH602185:522994-528500 1
#> 106 Human chr4:56214201-56291736 1
#> 107 Human chr7:127471196-127495720 1
#> 108 Human chrX:15,578,261-15,621,068 1
#> 109 Human chrX:15,560,138-15,602,945 1
#> 110 Coelacanth JH126819:1630199-1640227 1
#> 111 Elephant scaffold_0:64882726-64892725 1
#> 112 Wallaby GL095587:25,998-40,635 1
#> 113 Crab-eating macaque chr3:43196222-43472778 1
#> 114 Chinese pangolin KN005617:527189-790783 1
#> 115 Turkey chr5:57710001-57780000 1
#> 116 Turkey chr4:21251858-21288049 1
#> 117 Budgerigar JH556451:700038-706370 1
#> 118 Mouse lemur scaffold_31:985166-987669 1
#> 119 Mouse lemur KQ058561v1:1733963-1789196 1
#> 120 Mouse chr12:56694976-56714605 1
#> 121 Mouse chr12:47396009-47402736 1
#> 122 Mouse chr12:57795963-57815592 1
#> 123 Opossum scaffold_18580:4449881-4565227 1
#> 124 Ferret GL896955:7361256-7370255 1
#> 125 Microbat GL429775:12,072,919-12,378,895 1
#> 126 Tibetan frog KN907049v1:353180-356480 1
#> 127 Proboscis monkey chrM:1,150-2,550 1
#> 128 Gibbon GL397261:37115599-37125598 1
#> 129 Gibbon GL397298:23130040-23137416 1
#> 130 Gibbon chr21:52408339-52415715 1
#> 131 Pika scaffold_6491:75719-81052 1
#> 132 Pika JH802138:776400-918286 1
#> 133 Nile tilapia chrLG5:26068730-26095423 1
#> 134 Platypus chrX5:26250001-26320000 1
#> 135 Platypus chrX5:870777-1056769 1
#> 136 Rabbit chr9:11026346-11032288 1
#> 137 Medaka chr18:14,435,198-14,444,829 1
#> 138 Bushbaby GL873620:5980653-5987990 1
#> 139 Sheep chr19:53,315,047-53,326,013 1
#> 140 Sheep chr19:50686000-50700183 1
#> 141 Sheep chr11:41112382-41116848 1
#> 142 Bonobo JH649943:63,405-124,886 1
#> 143 Bonobo chr7:119267067-119359255 1
#> 144 Chimp chr6:115705331-115981791 1
#> 145 Chimp chr7:115900699-116162358 1
#> 146 Chimp chr3:132959918-132967918 1
#> 147 Chimp chr7:118772635-119046356 1
#> 148 Chimp chr7:111311998-111585728 1
#> 149 Baboon chr1:110,189,333-110,199,332 1
#> 150 Baboon chr1:106647222-106657040 1
#> 151 Baboon scaffold4004:96950-104215 1
#> 152 Lamprey Contig11034:8429-10197 1
#> 153 Lamprey GL476334:480870-830419 1
#> 154 Lamprey PIZI01000026v1:8,994,639-9,025,694 1
#> 155 Orangutan chrX:152299762-152501081 1
#> 156 Orangutan chrX:43955314-44095683 1
#> 157 P. pacificus chrUn:64713500-64721000 1
#> 158 Rock hyrax scaffold_15515:19471-24894 1
#> 159 Megabat scaffold_8765:35746-39000 1
#> 160 Rhesus chr3:70672926-70708108 1
#> 161 Rhesus chr7:58999504-59100350 1
#> 162 Rhesus chr14:70,034,487-70,048,046 1
#> 163 Rhesus chr3:64242280-64278013 1
#> 164 Golden snub-nosed monkey KN296311v1:4,926,665-4,968,516 1
#> 165 Rat chr1:79,003,435-79,006,520 1
#> 166 Rat chr1:81874031-81904651 1
#> 167 Rat chr1:80608553-80639261 1
#> 168 S. cerevisiae chr13:746300-756100 1
#> 169 S. cerevisiae chrIV:765959-775958 1
#> 170 S. cerevisiae chrIV:765966-775965 1
#> 171 Squirrel monkey JH378122:1872708-1880068 1
#> 172 Tasmanian devil chr4_GL856884_random:746,443-749,687 1
#> 173 Shrew scaffold_163319:6756-14632 1
#> 174 Shrew JH798167:2116583-2689712 1
#> 175 Squirrel JH393412:896020-902549 1
#> 176 S. purpuratus Scaffold1 1
#> 177 S. purpuratus Scaffold1 1
#> 178 Pig chr18:19836295-19840119 1
#> 179 Pig chr13:57394416-57400490 1
#> 180 Pig chr18:20905375-20909537 1
#> 181 Zebra finch chrZ:56,293,325-56,333,199 1
#> 182 Zebra finch chrZ:56283356-56343168 1
#> 183 Tarsier scaffold_66368:1-3044 1
#> 184 Tarsier KE942683v1:148505-160236 1
#> 185 Tetraodon chr10:2344000-2351500 1
#> 186 Tetraodon chr10:2797091-2804214 1
#> 187 Garter snake NW_013657986v1:596051-618240 1
#> 188 Manatee JH594607:13029229-13038048 1
#> 189 Tree shrew scaffold_149294.1-299378:275786-282564 1
#> 190 Dolphin JH481929:22304-29703 1
#> 191 Alpaca scaffold_5479:34441-51753 1
#> 192 Alpaca KB632466:7430155-7447383 1
#> 193 SARS-CoV-2 NC_045512v2:1-29903 1
#> 194 African clawed frog chr9_10L:104687822-104704936 1
#> 195 X. tropicalis scaffold_12:3462738-3490440 1
#> 196 X. tropicalis scaffold_27:565,941-578,374 1
#> 197 X. tropicalis GL172663:565941-578374 1
#> 198 X. tropicalis KB021661:77920643-77933995 1
#> 199 X. tropicalis chr9:15945953-15959305 1
#> orderKey genome scientificName
#> 1 16070 Panda Ailuropoda melanoleuca
#> 2 1425 American alligator Alligator mississippiensis
#> 3 12445 Lizard Anolis carolinensis
#> 4 12444 Lizard Anolis carolinensis
#> 5 1010 A. gambiae Anopheles gambiae
#> 6 1009 A. gambiae Anopheles gambiae
#> 7 1053 A. mellifera Apis mellifera
#> 8 1052 A. mellifera Apis mellifera
#> 9 19205 Sea hare Aplysia californica
#> 10 2715 Brown kiwi Apteryx australis
#> 11 7664 Golden eagle Aquila chrysaetos canadensis
#> 12 13475 Minke whale Balaenoptera acutorostrata scammoni
#> 13 2325 Bison Bison bison bison
#> 14 3634 Cow Bos taurus
#> 15 3633 Cow Bos taurus
#> 16 3632 Cow Bos taurus
#> 17 3629 Cow Bos taurus
#> 18 3628 Cow Bos taurus
#> 19 3627 Cow Bos taurus
#> 20 3626 Cow Bos taurus
#> 21 12025 Lancelet Branchiostoma floridae
#> 22 3058 C. japonica Caenorhabditis japonica
#> 23 3012 C. brenneri Caenorhabditis brenneri
#> 24 3011 C. brenneri Caenorhabditis brenneri
#> 25 3067 C. remanei Caenorhabditis remanei
#> 26 3066 C. remanei Caenorhabditis remanei
#> 27 13085 Marmoset Callithrix jacchus
#> 28 13084 Marmoset Callithrix jacchus
#> 29 5525 Elephant shark Callorhinchus milii
#> 30 4665 Dog Canis lupus familiaris
#> 31 4664 Dog Canis lupus familiaris
#> 32 4663 Dog Canis lupus familiaris
#> 33 7859 Guinea pig Cavia porcellus
#> 34 3025 C. elegans Caenorhabditis elegans
#> 35 3024 C. elegans Caenorhabditis elegans
#> 36 3033 C. elegans Caenorhabditis elegans
#> 37 3029 C. elegans Caenorhabditis elegans
#> 38 23265 White rhinoceros Ceratotherium simum
#> 39 7779 Green monkey Chlorocebus sabaeus
#> 40 19460 Sloth Choloepus hoffmanni
#> 41 16065 Painted turtle Chrysemys picta bellii
#> 42 3046 C. intestinalis Ciona intestinalis
#> 43 3045 C. intestinalis Ciona intestinalis
#> 44 3044 C. intestinalis Ciona intestinalis
#> 45 3350 Chinese hamster Cricetulus griseus
#> 46 3349 Chinese hamster Cricetulus griseus
#> 47 3348 Chinese hamster Cricetulus griseus
#> 48 26173 Zebrafish Danio rerio
#> 49 26172 Zebrafish Danio rerio
#> 50 26178 Zebrafish Danio rerio
#> 51 26177 Zebrafish Danio rerio
#> 52 26176 Zebrafish Danio rerio
#> 53 26175 Zebrafish Danio rerio
#> 54 26174 Zebrafish Danio rerio
#> 55 1725 Armadillo Dasypus novemcinctus
#> 56 11010 Kangaroo rat Dipodomys ordii
#> 57 4070 D. melanogaster Drosophila melanogaster
#> 58 4069 D. melanogaster Drosophila melanogaster
#> 59 4068 D. melanogaster Drosophila melanogaster
#> 60 4067 D. melanogaster Drosophila melanogaster
#> 61 4095 D. pseudoobscura Drosophila pseudoobscura
#> 62 4094 D. pseudoobscura Drosophila pseudoobscura
#> 63 4015 D. ananassae Drosophila ananassae
#> 64 4014 D. ananassae Drosophila ananassae
#> 65 4035 D. erecta Drosophila erecta
#> 66 4050 D. grimshawi Drosophila grimshawi
#> 67 4080 D. mojavensis Drosophila mojavensis
#> 68 4079 D. mojavensis Drosophila mojavensis
#> 69 4085 D. persimilis Drosophila persimilis
#> 70 4105 D. sechellia Drosophila sechellia
#> 71 4110 D. simulans Drosophila simulans
#> 72 4125 D. virilis Drosophila virilis
#> 73 4124 D. virilis Drosophila virilis
#> 74 4135 D. yakuba Drosophila yakuba
#> 75 4134 D. yakuba Drosophila yakuba
#> 76 5058 Ebola virus Filoviridae ebolavirus
#> 77 20175 Tenrec Echinops telfairi
#> 78 20174 Tenrec Echinops telfairi
#> 79 8685 Horse Equus caballus
#> 80 8684 Horse Equus caballus
#> 81 8683 Horse Equus caballus
#> 82 8315 Hedgehog Erinaceus europaeus
#> 83 8314 Hedgehog Erinaceus europaeus
#> 84 3243 Cat Felis catus
#> 85 3242 Cat Felis catus
#> 86 3241 Cat Felis catus
#> 87 3240 Cat Felis catus
#> 88 3239 Cat Felis catus
#> 89 6865 Fugu Takifugu rubripes
#> 90 6864 Fugu Takifugu rubripes
#> 91 6863 Fugu Takifugu rubripes
#> 92 1840 Atlantic cod Gadus morhua
#> 93 3317 Chicken Gallus gallus
#> 94 3316 Chicken Gallus gallus
#> 95 3315 Chicken Gallus gallus
#> 96 3314 Chicken Gallus gallus
#> 97 3313 Chicken Gallus gallus
#> 98 13060 Malayan flying lemur Galeopterus variegatus
#> 99 19820 Stickleback Gasterosteus aculeatus
#> 100 13365 Medium ground finch Geospiza fortis
#> 101 7683 Gorilla Gorilla gorilla gorilla
#> 102 7682 Gorilla Gorilla gorilla gorilla
#> 103 7681 Gorilla Gorilla gorilla gorilla
#> 104 14015 Naked mole-rat Heterocephalus glaber
#> 105 14014 Naked mole-rat Heterocephalus glaber
#> 106 90 Human Homo sapiens
#> 107 80 Human Homo sapiens
#> 108 60 Human Homo sapiens
#> 109 50 Human Homo sapiens
#> 110 3610 Coelacanth Latimeria chalumnae
#> 111 5518 Elephant Loxodonta africana
#> 112 23019 Wallaby Macropus eugenii
#> 113 3705 Crab-eating macaque Macaca fascicularis
#> 114 3355 Chinese pangolin Manis pentadactyla
#> 115 20835 Turkey Meleagris gallopavo
#> 116 20834 Turkey Meleagris gallopavo
#> 117 2905 Budgerigar Melopsittacus undulatus
#> 118 13680 Mouse lemur Microcebus murinus
#> 119 13679 Mouse lemur Microcebus murinus
#> 120 270 Mouse Mus musculus
#> 121 289 Mouse Mus musculus
#> 122 287 Mouse Mus musculus
#> 123 15625 Opossum Monodelphis domestica
#> 124 6315 Ferret Mustela putorius furo
#> 125 13464 Microbat Myotis lucifugus
#> 126 20312 Tibetan frog Nanorana parkeri
#> 127 16785 Proboscis monkey Nasalis larvatus
#> 128 7415 Gibbon Nomascus leucogenys
#> 129 7414 Gibbon Nomascus leucogenys
#> 130 7413 Gibbon Nomascus leucogenys
#> 131 16325 Pika Ochotona princeps
#> 132 16324 Pika Ochotona princeps
#> 133 14419 Nile tilapia Oreochromis niloticus
#> 134 16410 Platypus Ornithorhynchus anatinus
#> 135 16409 Platypus Ornithorhynchus anatinus
#> 136 18009 Rabbit Oryctolagus cuniculus
#> 137 13359 Medaka Oryzias latipes
#> 138 2940 Bushbaby Otolemur garnettii
#> 139 19315 Sheep Ovis aries
#> 140 19314 Sheep Ovis aries
#> 141 19313 Sheep Ovis aries
#> 142 2625 Bonobo Pan paniscus
#> 143 2624 Bonobo Pan paniscus
#> 144 3330 Chimp Pan troglodytes
#> 145 3328 Chimp Pan troglodytes
#> 146 3327 Chimp Pan troglodytes
#> 147 3326 Chimp Pan troglodytes
#> 148 3325 Chimp Pan troglodytes
#> 149 2050 Baboon Papio anubis
#> 150 2048 Baboon Papio anubis
#> 151 2051 Baboon Papio hamadryas
#> 152 12020 Lamprey Petromyzon marinus
#> 153 12019 Lamprey Petromyzon marinus
#> 154 12018 Lamprey Petromyzon marinus
#> 155 15765 Orangutan Pongo pygmaeus abelii
#> 156 15764 Orangutan Pongo pygmaeus abelii
#> 157 16015 P. pacificus Pristionchus pacificus
#> 158 18760 Rock hyrax Procavia capensis
#> 159 13370 Megabat Pteropus vampyrus
#> 160 18410 Rhesus Macaca mulatta
#> 161 18414 Rhesus Macaca mulatta
#> 162 18413 Rhesus Macaca mulatta
#> 163 18411 Rhesus Macaca mulatta
#> 164 7673 Golden snub-nosed monkey Rhinopithecus roxellana
#> 165 18033 Rat Rattus norvegicus
#> 166 18032 Rat Rattus norvegicus
#> 167 18031 Rat Rattus norvegicus
#> 168 19015 S. cerevisiae Saccharomyces cerevisiae
#> 169 19014 S. cerevisiae Saccharomyces cerevisiae
#> 170 19013 S. cerevisiae Saccharomyces cerevisiae
#> 171 19725 Squirrel monkey Saimiri boliviensis
#> 172 20085 Tasmanian devil Sarcophilus harrisii
#> 173 19330 Shrew Sorex araneus
#> 174 19329 Shrew Sorex araneus
#> 175 19714 Squirrel Spermophilus tridecemlineatus
#> 176 19040 S. purpuratus Strongylocentrotus purpuratus
#> 177 19039 S. purpuratus Strongylocentrotus purpuratus
#> 178 16312 Pig Sus scrofa
#> 179 16314 Pig Sus scrofa
#> 180 16313 Pig Sus scrofa
#> 181 26160 Zebra finch Taeniopygia guttata
#> 182 26159 Zebra finch Taeniopygia guttata
#> 183 20080 Tarsier Tarsius syrichta
#> 184 20079 Tarsier Tarsius syrichta
#> 185 20185 Tetraodon Tetraodon nigroviridis
#> 186 20184 Tetraodon Tetraodon nigroviridis
#> 187 7000 Garter snake Thamnophis sirtalis
#> 188 13075 Manatee Trichechus manatus latirostris
#> 189 20715 Tree shrew Tupaia belangeri
#> 190 4674 Dolphin Tursiops truncatus
#> 191 1351 Alpaca Vicugna pacos
#> 192 1350 Alpaca Vicugna pacos
#> 193 22324 SARS-CoV-2 SARS-CoV-2
#> 194 1225 African clawed frog Xenopus laevis
#> 195 24040 X. tropicalis Xenopus tropicalis
#> 196 24039 X. tropicalis Xenopus tropicalis
#> 197 24038 X. tropicalis Xenopus tropicalis
#> 198 24037 X. tropicalis Xenopus tropicalis
#> 199 24036 X. tropicalis Xenopus tropicalis
#> htmlPath hgNearOk hgPbOk
#> 1 /gbdb/ailMel1/html/description.html 0 0
#> 2 /gbdb/allMis1/html/description.html 0 0
#> 3 /gbdb/anoCar1/html/description.html 0 0
#> 4 /gbdb/anoCar2/html/description.html 0 0
#> 5 /gbdb/anoGam1/html/description.html 0 0
#> 6 /gbdb/anoGam3/html/description.html 0 0
#> 7 /gbdb/apiMel1/html/description.html 0 0
#> 8 /gbdb/apiMel2/html/description.html 0 0
#> 9 /gbdb/aplCal1/html/description.html 0 0
#> 10 /gbdb/aptMan1/html/description.html 0 0
#> 11 /gbdb/aquChr2/html/description.html 0 0
#> 12 /gbdb/balAcu1/html/description.html 0 0
#> 13 /gbdb/bisBis1/html/description.html 0 0
#> 14 /gbdb/bosTau2/html/description.html 0 0
#> 15 /gbdb/bosTau3/html/description.html 0 0
#> 16 /gbdb/bosTau4/html/description.html 0 0
#> 17 /gbdb/bosTau6/html/description.html 0 0
#> 18 /gbdb/bosTau7/html/description.html 0 0
#> 19 /gbdb/bosTau8/html/description.html 0 0
#> 20 /gbdb/bosTau9/html/description.html 0 0
#> 21 /gbdb/braFlo1/html/description.html 0 0
#> 22 /gbdb/caeJap1/html/description.html 0 0
#> 23 /gbdb/caePb1/html/description.html 0 0
#> 24 /gbdb/caePb2/html/description.html 0 0
#> 25 /gbdb/caeRem2/html/description.html 0 0
#> 26 /gbdb/caeRem3/html/description.html 0 0
#> 27 /gbdb/calJac1/html/description.html 0 0
#> 28 /gbdb/calJac3/html/description.html 0 0
#> 29 /gbdb/calMil1/html/description.html 0 0
#> 30 /gbdb/canFam1/html/description.html 0 0
#> 31 /gbdb/canFam2/html/description.html 0 0
#> 32 /gbdb/canFam3/html/description.html 0 0
#> 33 /gbdb/cavPor3/html/description.html 0 0
#> 34 /gbdb/ce10/html/description.html 0 0
#> 35 /gbdb/ce11/html/description.html 0 0
#> 36 /gbdb/ce2/html/description.html 1 0
#> 37 /gbdb/ce6/html/description.html 1 0
#> 38 /gbdb/cerSim1/html/description.html 0 0
#> 39 /gbdb/chlSab2/html/description.html 0 0
#> 40 /gbdb/choHof1/html/description.html 0 0
#> 41 /gbdb/chrPic1/html/description.html 0 0
#> 42 /gbdb/ci1/html/description.html 0 0
#> 43 /gbdb/ci2/html/description.html 0 0
#> 44 /gbdb/ci3/html/description.html 0 0
#> 45 /gbdb/criGri1/html/description.html 0 0
#> 46 /gbdb/criGriChoV1/html/description.html 0 0
#> 47 /gbdb/criGriChoV2/html/description.html 0 0
#> 48 /gbdb/danRer10/html/description.html 0 0
#> 49 /gbdb/danRer11/html/description.html 0 0
#> 50 /gbdb/danRer3/html/description.html 0 0
#> 51 /gbdb/danRer4/html/description.html 0 0
#> 52 /gbdb/danRer5/html/description.html 0 0
#> 53 /gbdb/danRer6/html/description.html 0 0
#> 54 /gbdb/danRer7/html/description.html 0 0
#> 55 /gbdb/dasNov3/html/description.html 0 0
#> 56 /gbdb/dipOrd1/html/description.html 0 0
#> 57 /gbdb/dm1/html/description.html 1 0
#> 58 /gbdb/dm2/html/description.html 1 0
#> 59 /gbdb/dm3/html/description.html 1 0
#> 60 /gbdb/dm6/html/description.html 0 0
#> 61 /gbdb/dp2/html/description.html 0 0
#> 62 /gbdb/dp3/html/description.html 0 0
#> 63 /gbdb/droAna1/html/description.html 0 0
#> 64 /gbdb/droAna2/html/description.html 0 0
#> 65 /gbdb/droEre1/html/description.html 0 0
#> 66 /gbdb/droGri1/html/description.html 0 0
#> 67 /gbdb/droMoj1/html/description.html 0 0
#> 68 /gbdb/droMoj2/html/description.html 0 0
#> 69 /gbdb/droPer1/html/description.html 0 0
#> 70 /gbdb/droSec1/html/description.html 0 0
#> 71 /gbdb/droSim1/html/description.html 0 0
#> 72 /gbdb/droVir1/html/description.html 0 0
#> 73 /gbdb/droVir2/html/description.html 0 0
#> 74 /gbdb/droYak1/html/description.html 0 0
#> 75 /gbdb/droYak2/html/description.html 0 0
#> 76 /gbdb/eboVir3/html/description.html 0 0
#> 77 /gbdb/echTel1/html/description.html 0 0
#> 78 /gbdb/echTel2/html/description.html 0 0
#> 79 /gbdb/equCab1/html/description.html 0 0
#> 80 /gbdb/equCab2/html/description.html 0 0
#> 81 /gbdb/equCab3/html/description.html 0 0
#> 82 /gbdb/eriEur1/html/description.html 0 0
#> 83 /gbdb/eriEur2/html/description.html 0 0
#> 84 /gbdb/felCat3/html/description.html 0 0
#> 85 /gbdb/felCat4/html/description.html 0 0
#> 86 /gbdb/felCat5/html/description.html 0 0
#> 87 /gbdb/felCat8/html/description.html 0 0
#> 88 /gbdb/felCat9/html/description.html 0 0
#> 89 /gbdb/fr1/html/description.html 0 0
#> 90 /gbdb/fr2/html/description.html 0 0
#> 91 /gbdb/fr3/html/description.html 0 0
#> 92 /gbdb/gadMor1/html/description.html 0 0
#> 93 /gbdb/galGal2/html/description.html 0 0
#> 94 /gbdb/galGal3/html/description.html 0 0
#> 95 /gbdb/galGal4/html/description.html 0 0
#> 96 /gbdb/galGal5/html/description.html 0 0
#> 97 /gbdb/galGal6/html/description.html 0 0
#> 98 /gbdb/galVar1/html/description.html 0 0
#> 99 /gbdb/gasAcu1/html/description.html 0 0
#> 100 /gbdb/geoFor1/html/description.html 0 0
#> 101 /gbdb/gorGor3/html/description.html 0 0
#> 102 /gbdb/gorGor4/html/description.html 0 0
#> 103 /gbdb/gorGor5/html/description.html 0 0
#> 104 /gbdb/hetGla1/html/description.html 0 0
#> 105 /gbdb/hetGla2/html/description.html 0 0
#> 106 /gbdb/hg16/html/description.html 1 0
#> 107 /gbdb/hg17/html/description.html 1 0
#> 108 /gbdb/hg19/html/description.html 1 0
#> 109 /gbdb/hg38/html/description.html 1 0
#> 110 /gbdb/latCha1/html/description.html 0 0
#> 111 /gbdb/loxAfr3/html/description.html 0 0
#> 112 /gbdb/macEug2/html/description.html 0 0
#> 113 /gbdb/macFas5/html/description.html 0 0
#> 114 /gbdb/manPen1/html/description.html 0 0
#> 115 /gbdb/melGal1/html/description.html 0 0
#> 116 /gbdb/melGal5/html/description.html 0 0
#> 117 /gbdb/melUnd1/html/description.html 0 0
#> 118 /gbdb/micMur1/html/description.html 0 0
#> 119 /gbdb/micMur2/html/description.html 0 0
#> 120 /gbdb/mm10/html/description.html 1 0
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#> 123 /gbdb/monDom1/html/description.html 0 0
#> 124 /gbdb/musFur1/html/description.html 0 0
#> 125 /gbdb/myoLuc2/html/description.html 0 0
#> 126 /gbdb/nanPar1/html/description.html 0 0
#> 127 /gbdb/nasLar1/html/description.html 0 0
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#> 130 /gbdb/nomLeu3/html/description.html 0 0
#> 131 /gbdb/ochPri2/html/description.html 0 0
#> 132 /gbdb/ochPri3/html/description.html 0 0
#> 133 /gbdb/oreNil2/html/description.html 0 0
#> 134 /gbdb/ornAna1/html/description.html 0 0
#> 135 /gbdb/ornAna2/html/description.html 0 0
#> 136 /gbdb/oryCun2/html/description.html 0 0
#> 137 /gbdb/oryLat2/html/description.html 0 0
#> 138 /gbdb/otoGar3/html/description.html 0 0
#> 139 /gbdb/oviAri1/html/description.html 0 0
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#> 141 /gbdb/oviAri4/html/description.html 0 0
#> 142 /gbdb/panPan1/html/description.html 0 0
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#> 145 /gbdb/panTro3/html/description.html 0 0
#> 146 /gbdb/panTro4/html/description.html 0 0
#> 147 /gbdb/panTro5/html/description.html 0 0
#> 148 /gbdb/panTro6/html/description.html 0 0
#> 149 /gbdb/papAnu2/html/description.html 0 0
#> 150 /gbdb/papAnu4/html/description.html 0 0
#> 151 /gbdb/papHam1/html/description.html 0 0
#> 152 /gbdb/petMar1/html/description.html 0 0
#> 153 /gbdb/petMar2/html/description.html 0 0
#> 154 /gbdb/petMar3/html/description.html 0 0
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#> sourceName
#> 1 BGI-Shenzhen AilMel 1.0 Dec. 2009
#> 2 International Crocodilian Genomes Working Group
#> 3 Broad Institute AnoCar (1.0)
#> 4 Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1)
#> 5 IAGEC v.MOZ2
#> 6 The International Consortium for the Sequencing of Anopheles Genome
#> 7 Baylor HGSC Amel_1.2
#> 8 Baylor HGSC Amel_2.0
#> 9 Broad v. Aplcal2.0
#> 10 Max-Plank Institute for Evolutionary Anthropology AptMant0
#> 11 WashU
#> 12 Korea Ocean Research & Development Institute
#> 13 U. Maryland
#> 14 Baylor Btau_2.0
#> 15 Baylor Release 3.1
#> 16 Baylor Release 4.0
#> 17 UMD_3.1 (NCBI project 10708, accession GCA_000003055.3)
#> 18 Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4)
#> 19 University of Maryland Bos_taurus_UMD_3.1.1
#> 20 USDA ARS
#> 21 JGI v.1.0 (March 2006)
#> 22 Washington University School of Medicine GSC C. remanei 3.0.2
#> 23 Washington University School of Medicine GSC Caenorhabditis n. sp. PB2801
#> 24 Washington University School of Medicine GSC Caenorhabditis brenneri (PB2801) 6.0.1
#> 25 Washington University School of Medicine GSC C. remanei 1.0
#> 26 Washington University School of Medicine GSC C. remanei 15.0.1
#> 27 WUSTL 2.0.2
#> 28 WUSTL 3.2 (GCA_000004665.1)
#> 29 Institute of Molecular and Cell Biology, Singapore
#> 30 Broad Institute v. 1.0
#> 31 Broad Institute v. 2.0
#> 32 Broad CanFam3.1 (GCA_000002285.2)
#> 33 Broad Institute cavPor3
#> 34 Washington University School of Medicine GSC and Sanger Institute WS220
#> 35 C. elegans Sequencing Consortium WBcel235 (GCA_000002985.3)
#> 36 WormBase v. WS120
#> 37 Washington University School of Medicine GSC and Sanger Institute WS190
#> 38 Broad Institute
#> 39 Vervet Genomics Consortium GCA_000409795.2
#> 40 Broad Institute choHof1
#> 41 International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1)
#> 42 JGI v1.0
#> 43 JGI v2.0
#> 44 Kyoto KH
#> 45 Beijing Genomics Institution-Shenzhen
#> 46 Beijing Genomics Institute
#> 47 Eagle Genomics Ltd
#> 48 Genome Reference Consortium Zebrafish Build 10 (GCA_000002035.3)
#> 49 Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4)
#> 50 Sanger Centre, Danio rerio Sequencing Project Zv5
#> 51 Sanger Centre, Danio rerio Sequencing Project Zv6
#> 52 Wellcome Trust Sanger Institute, Zv7 assembly
#> 53 Wellcome Trust Sanger Institute, Zv8 assembly (CAAK00000000.5)
#> 54 Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2)
#> 55 Baylor College of Medicine Dasnov3.0 (GCA_000208655.2)
#> 56 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000)
#> 57 BDGP v. 3
#> 58 BDGP v. 4 / DHGP v. 3.2
#> 59 BDGP Release 5
#> 60 The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics (GCA_000001215.4)
#> 61 Baylor HGSC Freeze 1
#> 62 FlyBase Release 1.03
#> 63 TIGR 15 July 2004
#> 64 Agencourt 1 August 2005
#> 65 Agencourt 1 Aug 2005
#> 66 Agencourt 1 Aug 2005
#> 67 Agencourt 11 Aug 2004
#> 68 Agencourt 1 August 2005
#> 69 Broad 28 Oct. 2005
#> 70 Broad 28 Oct. 2005
#> 71 WUSTL version 1.0
#> 72 Agencourt 12 July 2004
#> 73 Agencourt 1 August 2005
#> 74 WUSTL version 1.0
#> 75 WUSTL version 2.0
#> 76 West Africa 01 June 2014 EBOV/G3683/KM034562.1
#> 77 Broad July 2005
#> 78 Broad/EchTel2.0
#> 79 Broad Institute equCab1 (1.0)
#> 80 Broad Institute EquCab2
#> 81 University of Louisville
#> 82 Broad Institute eriEur1 (Draft_v1, NCBI project 12575)
#> 83 Broad Institute EriEur2.0
#> 84 Broad Release 3
#> 85 NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)
#> 86 International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2)
#> 87 International Cat Genome Sequencing Consortium
#> 88 Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine
#> 89 JGI V3.0
#> 90 JGI V4.0
#> 91 Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2)
#> 92 Genofisk GadMor_May2010 (GCA_000231765.1)
#> 93 Chicken Genome Sequencing Consortium Feb. 2004 release
#> 94 Chicken Genome Sequencing Consortium May 2006 release
#> 95 ICGSC Gallus_gallus-4.0 (GCA_000002315.2)
#> 96 ICGC Gallus_gallus-5.0 (GCA_000002315.3)
#> 97 Genome Reference Consortium
#> 98 Washington University (WashU)
#> 99 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000)
#> 100 Beijing Genomics Institute
#> 101 Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1)
#> 102 Wellcome Trust Sanger Institute Dec 2014 (NCBI project 31265, GCA_000151905.1)
#> 103 UNIVERSITY OF WASHINGTON
#> 104 HetGla_1.0 (NCBI project 68323, accession GCA_000230445.1
#> 105 Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01)
#> 106 NCBI Build 34
#> 107 NCBI Build 35
#> 108 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)
#> 109 GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15)
#> 110 Broad LatCha1 (GCA_000225785.1)
#> 111 Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000)
#> 112 TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1)
#> 113 Washington University (WashU) GCA_000364345.1
#> 114 Washington University (WashU) GCA_000738955.1
#> 115 TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1)
#> 116 Turkey Genome Consortium
#> 117 WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1)
#> 118 Broad Institute micMur1 (NCBI project 19967, ABDC00000000)
#> 119 Broad Institute and Baylor College of Medicine Mmur_2.0
#> 120 Genome Reference Consortium Mouse Build 38 (GCA_000001635.2)
#> 121 NCBI Build 35
#> 122 NCBI Build 37
#> 123 Broad Inst. Prelim Oct04
#> 124 Ferret Genome Sequencing Consortium
#> 125 Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1)
#> 126 ASM93562v1
#> 127 Proboscis Monkey Functional Genome Consortium
#> 128 GGSC (NCBI project 13975, accession GCA_000146795.1)
#> 129 Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01)
#> 130 Gibbon Genome Sequencing Consortium
#> 131 Broad Institute ochPri2
#> 132 Broad Institute
#> 133 Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.2)
#> 134 WUSTL version 5.0.1
#> 135 WUGSC ASM227v2
#> 136 Broad Institute oryCun2 (NCBI project 12819, AAGW00000000)
#> 137 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000)
#> 138 Broad Institute (GCA_000181295.3)
#> 139 ISGC (NCBI project 10709, accession GCA_000005525.1)
#> 140 International Sheep Genome Consortium
#> 141 International Sheep Genome Consortium
#> 142 Max-Planck Institute panpan1 (GCA_000258655.1)
#> 143 Max-Planck Institute for Evolutionary Anthropology
#> 144 CGSC Build 1 Version 1 Arachne assembly
#> 145 CGSC 2.1.3 (GCA_000001515.3)
#> 146 CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4)
#> 147 Chimpanzee Sequencing and Analysis Consortium
#> 148 University of Washington
#> 149 Baylor College of Medicine
#> 150 Human Genome Sequencing Center
#> 151 Baylor BCM HGSC Pham_1.0
#> 152 WUSTL v.3.0 (March 2007)
#> 153 GSC Washington University School of Medicine
#> 154 University of Kentucky
#> 155 WUSTL 3.0
#> 156 University of Washington
#> 157 Washington University School of Medicine GSC Pristionchus pacificus 5.0
#> 158 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000)
#> 159 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000)
#> 160 The Genome Institute at Washington University School of Medicine
#> 161 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4
#> 162 Beijing Genomics Institute, Shenzhen (GCA_000230795.1)
#> 163 Baylor College of Medicine Genome Sequencing Center
#> 164 Novogene
#> 165 Baylor HGSC v. 3.4
#> 166 RGSC Rnor_5.0 (GCA_000001895.3)
#> 167 RGSC Rnor_6.0 (GCA_000001895.4)
#> 168 SGD sequence data as of 1 Oct. 2003
#> 169 SGD June 2008
#> 170 Saccharomyces cerevisiae S288c assembly from Saccharomyces Genome Database (GCA_000146045.2)
#> 171 Broad SaiBol1.0 (GCA_000235385.1)
#> 172 Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1)
#> 173 Broad Institute sorAra1 (Draft_v2)
#> 174 Broad Institute SorAra2.0
#> 175 Broad Institute (GCA_000236235.1)
#> 176 Baylor
#> 177 Baylor release 3 Spur 2.1
#> 178 The Swine Genome Sequencing Consortium (SGSC)
#> 179 SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2)
#> 180 SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01)
#> 181 Washington University taeGut1
#> 182 Washington University School of Medicine
#> 183 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000)
#> 184 Washington University
#> 185 Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000)
#> 186 Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000)
#> 187 The Genome Institute at Washington University School of Medicine (WUGSC)
#> 188 Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1)
#> 189 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000)
#> 190 Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02)
#> 191 Broad Institute vicPac1
#> 192 Broad Institute
#> 193 SARS-CoV-2
#> 194 International Xenopus Sequencing Consortium
#> 195 JGI v3.0
#> 196 JGI v4.1
#> 197 US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1)
#> 198 US DOE Joint Genome Institute (JGI-PGF)
#> 199 DOE Joint Genome Institute
#> taxId genes_available year eff_genome_size_36bp eff_genome_size_50bp
#> 1 9646 TRUE 2009 2131884815 2195257147
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#> 9 6500 FALSE 2008 530137715 554440247
#> 10 202946 TRUE 2015 1177784823 1226057798
#> 11 216574 FALSE 2014 1164404249 1156712632
#> 12 310752 TRUE 2013 2112071444 2155112740
#> 13 43346 TRUE 2014 2267069341 2419640251
#> 14 9913 FALSE 2005 2329344724 2441804553
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#> 32 9615 TRUE 2011 2210414284 2257374609
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#> 77 9371 TRUE 2005 1948799048 2025926306
#> 78 9371 TRUE 2012 2469203555 2549159621
#> 79 9796 TRUE 2007 2265459146 2342116052
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#> 173 42254 TRUE 2006 1588116618 1665527731
#> 174 42254 TRUE 2008 2027367168 2082983519
#> 175 43179 TRUE 2011 2203485496 2278869691
#> 176 7668 FALSE 2005 653677483 684233104
#> 177 7668 TRUE 2006 629119661 657491431
#> 178 9823 TRUE 2017 2251975994 2359453421
#> 179 9823 TRUE 2009 1850120004 1931583072
#> 180 9823 TRUE 2011 2070836398 2187994665
#> 181 59729 TRUE 2008 1082827127 1092832772
#> 182 59729 TRUE 2013 1081302374 1090587244
#> 183 9478 TRUE 2008 2167811273 2287634951
#> 184 9478 TRUE 2013 2831523061 3034380185
#> 185 99883 FALSE 2004 284280428 289963988
#> 186 99883 TRUE 2007 279175395 284977227
#> 187 35019 TRUE 2015 1034186387 1087192819
#> 188 127582 TRUE 2011 2454704360 2653541349
#> 189 37347 TRUE 2006 1899556055 1965229121
#> 190 9739 FALSE 2011 2111954030 2219454414
#> 191 30538 TRUE 2008 1611001133 1651518517
#> 192 30538 TRUE 2013 1990331348 2036385940
#> 193 2697049 FALSE 2020 29717 30013
#> 194 8355 TRUE 2016 2078985670 2224687744
#> 195 8364 FALSE 2004 1083700421 1143383118
#> 196 8364 FALSE 2005 1079733578 1137453808
#> 197 8364 TRUE 2009 1078501769 1136575021
#> 198 8364 TRUE 2012 1101740539 1150551930
#> 199 8364 TRUE 2016 1102271481 1150810454
#> eff_genome_size_75bp eff_genome_size_100bp eff_genome_size_125bp
#> 1 2167233843 2206501040 2213941269
#> 2 2117005123 2101224009 2132575305
#> 3 1546382680 1625802590 1631352518
#> 4 1515016862 1588732450 1591937036
#> 5 244518328 245185247 252674917
#> 6 235078254 235159739 241476157
#> 7 209839383 205236926 208542883
#> 8 224970254 221201832 225439413
#> 9 586238703 600961231 613700879
#> 10 1230055839 1229636655 1234686670
#> 11 1168818108 1185561777 1190703152
#> 12 2180121651 2190476262 2188849474
#> 13 2538054415 2595159374 2632262785
#> 14 2571839434 2669823128 2705832969
#> 15 2431887911 2506021572 2557117255
#> 16 2432915224 2505486073 2557715270
#> 17 2488370764 2574268197 2598720867
#> 18 2473479436 2544869333 2611117300
#> 19 2488370764 2573101765 2598454772
#> 20 2505552684 2584925434 2621783782
#> 21 722935343 748038138 760030946
#> 22 119526286 123164631 123019011
#> 23 165479744 167889586 172312999
#> 24 162562845 163446453 168874343
#> 25 135758584 138636162 140655848
#> 26 130885788 132055741 135500273
#> 27 2779087789 2818484350 2861860060
#> 28 2663961277 2723618943 2715456780
#> 29 898374786 924841952 930514710
#> 30 2311010068 2321456417 2325377897
#> 31 2316618420 2334606191 2331953754
#> 32 2315694385 2334739596 2329901805
#> 33 2518361991 2562970590 2532291103
#> 34 96995949 98287299 96793198
#> 35 96945370 98259898 96743752
#> 36 97024134 98305194 96763672
#> 37 97009298 98291106 96774004
#> 38 2324723334 2348343024 2371010480
#> 39 2747726414 2737089388 2737593504
#> 40 1854749044 1867731792 1902998628
#> 41 2086416793 2140833530 2187442325
#> 42 111914070 111892622 111829095
#> 43 125129644 128990070 128616212
#> 44 111080608 111313621 111260833
#> 45 2279971770 2260664696 2275902040
#> 46 2292923556 2272353895 2262642984
#> 47 2321005934 2301625706 2296990119
#> 48 1251132611 1280188944 1289282795
#> 49 1338942595 1386687502 1412543888
#> 50 1290373021 1339287580 1366478967
#> 51 1323660583 1357366310 1383923039
#> 52 1264909432 1303348568 1319323628
#> 53 1286334736 1323343439 1341434098
#> 54 1267788788 1309885838 1325196801
#> 55 3168828598 3224911116 3260910405
#> 56 1656775775 1656981328 1727371654
#> 57 121269160 122596173 120940589
#> 58 121469123 122605835 120872740
#> 59 135004387 139647132 140782688
#> 60 127324557 129789773 129118944
#> 61 127210863 129665994 131012957
#> 62 131024522 133850188 135201601
#> 63 153328058 154038196 157511707
#> 64 171054862 175410322 182870259
#> 65 132051715 131646059 134288722
#> 66 159181084 164288279 176344654
#> 67 161763564 164886416 163972811
#> 68 159944738 163098605 162992360
#> 69 146484137 152962920 160000019
#> 70 129808710 132948367 134446009
#> 71 121727468 123843013 124069873
#> 72 166631268 167408414 169508602
#> 73 167040412 169267591 172310574
#> 74 150296005 152781341 156698612
#> 75 147800167 149812659 152389770
#> 76 18995 18708 18745
#> 77 2054812113 2082302167 2108880976
#> 78 2553104096 2610545071 2663841375
#> 79 2348604116 2389548720 2383716739
#> 80 2356335734 2396216274 2381883805
#> 81 2351121965 2410668088 2407320359
#> 82 1863844826 1921655453 1977082026
#> 83 2293643014 2316952981 2324770353
#> 84 1547515102 1576566627 1602333433
#> 85 1971712839 1977092798 1976272001
#> 86 2357214867 2351729278 2393512020
#> 87 2440575465 2452645507 2495404470
#> 88 2422704340 2452699800 2485074609
#> 89 305810806 313233208 312725665
#> 90 332664147 340907590 343410795
#> 91 331709289 338795776 342024435
#> 92 558531623 550869580 562214805
#> 93 1021433738 1032036363 1028863295
#> 94 1013771201 1026474312 1019530731
#> 95 1003141816 1012194374 1009728017
#> 96 1088799481 1110065074 1122257082
#> 97 1022009057 1035428830 1030448168
#> 98 2604466798 2630430229 2678259989
#> 99 421874879 431580441 432890350
#> 100 1023185495 1036763451 1014590880
#> 101 2646928590 2713037134 2678569010
#> 102 2760349406 2797000882 2774472360
#> 103 2872542393 2946362570 2921207952
#> 104 2390528896 2371895684 2385411533
#> 105 2350718134 2352589212 2306600670
#> 106 2727431988 2768524609 2794340756
#> 107 NA NA NA
#> 108 2740145681 2781532906 2809561002
#> 109 2758258906 2815435213 2846835159
#> 110 2160179681 2197051616 2174432697
#> 111 3048315093 3027548123 3082540269
#> 112 2514054052 2564205349 2553857102
#> 113 2720309447 2766838985 2765736972
#> 114 1950712687 1956468308 1961371890
#> 115 941487089 946886889 931095266
#> 116 1027204236 1039750767 1021912044
#> 117 1074769286 1081830938 1082070641
#> 118 1754756513 1789275441 1811906383
#> 119 2309170660 2323308509 2370332510
#> 120 2407883243 2467481008 2470611367
#> 121 2393368889 2432601839 2432697052
#> 122 2404646149 2463437085 2462759001
#> 123 3416764768 3415514575 3450492461
#> 124 2238593104 2283329598 2284135052
#> 125 1864451532 1932616765 1943619607
#> 126 1864720465 1887681548 1916457961
#> 127 2308168585 2295656604 2326446582
#> 128 2627362634 2666215927 2684107184
#> 129 2627362634 2666215927 2684107184
#> 130 2628989393 2667459566 2686070678
#> 131 1683663126 1751244469 1782710722
#> 132 1940917408 1927608954 1968980927
#> 133 794680900 804892811 806918618
#> 134 1714659829 1731909549 1758198117
#> 135 1714659829 1731909549 1758198117
#> 136 2455596761 2567514875 2530231927
#> 137 669843373 688582054 693190548
#> 138 2326903588 2360765619 2376232068
#> 139 1310243483 1370545169 1426047080
#> 140 2428401343 2454408627 2479159031
#> 141 2479090744 2503077079 2525829798
#> 142 2704194248 2715345369 2748263655
#> 143 2708768686 2716964759 2746842500
#> 144 2681036141 2725399550 2734318855
#> 145 2797589488 2832180738 2869258112
#> 146 2798283587 2833287471 2869379773
#> 147 2951051811 2973320275 3012001966
#> 148 2847165666 2863127781 2910512259
#> 149 2751414784 2824586720 2786500004
#> 150 2782239179 2875423780 2833162760
#> 151 2649519102 2686702237 2653764161
#> 152 734710777 765641923 786626878
#> 153 585721650 603643975 610183176
#> 154 933904576 953270953 953458269
#> 155 2936952972 2965573105 2973335489
#> 156 2881592891 2930088517 2909339384
#> 157 137558853 141148920 144063980
#> 158 2321049126 2338437816 2358814839
#> 159 1789669909 1800783352 1807387467
#> 160 2745217109 2787948397 2835960902
#> 161 2598624693 2641821764 2637388590
#> 162 2584765248 2644782000 2635511378
#> 163 2829400873 2919626904 2933154523
#> 164 2782181636 2760310315 2758763304
#> 165 2371368926 2427514240 2429200045
#> 166 2367910464 2403827026 2404459534
#> 167 2482781526 2524146883 2530421977
#> 168 11692316 11778542 11615055
#> 169 11695721 11776946 11615023
#> 170 11693438 11777680 11607172
#> 171 2451084463 2484230858 2470141228
#> 172 2885756334 2930768561 2920136607
#> 173 1710362008 1738934197 1778762983
#> 174 2178824784 2196734899 2184138641
#> 175 2305545675 2309083117 2308579457
#> 176 735807897 746066017 756490430
#> 177 714561307 714314421 723792664
#> 178 2399118907 2423467179 2469088872
#> 179 1982895223 2007599470 2058146960
#> 180 2225991406 2250184395 2313499881
#> 181 1151148718 1166374225 1196697695
#> 182 1147281256 1162176049 1190798824
#> 183 2412342350 2440811589 2471659093
#> 184 3172618170 3196320981 3228708730
#> 185 298770894 300221697 306190831
#> 186 291072833 293573199 298630528
#> 187 1097477027 1135165590 1130313422
#> 188 2754266455 2745398282 2810242366
#> 189 2036693007 2077327385 2087803390
#> 190 2262044165 2285959978 2306500455
#> 191 1694797553 1720273984 1767657799
#> 192 2035180053 2068128332 2032126571
#> 193 30012 29191 29668
#> 194 2325017132 2340036892 2383690240
#> 195 1204660768 1258421190 1257333286
#> 196 1198977339 1250569390 1245469786
#> 197 1197763292 1249184295 1244815886
#> 198 1211786928 1258355110 1269937890
#> 199 1215482077 1258487354 1273499084
#> eff_genome_size_150bp eff_genome_size_200bp eff_genome_size_250bp
#> 1 2196290908 2233702932 2212959190
#> 2 2148090938 2122242508 2138519849
#> 3 1655584417 1673791275 1695639336
#> 4 1622306821 1630816189 1655957653
#> 5 253436649 258819420 258983747
#> 6 242124773 246208275 244765059
#> 7 204652578 204067897 208635328
#> 8 223569258 222977284 229239253
#> 9 603676863 612168947 620594166
#> 10 1249559914 1233717066 1252129915
#> 11 1182220769 1166510059 1180673397
#> 12 2230236795 2209564062 2219675236
#> 13 2623239154 2672320877 2634682960
#> 14 2752241996 2797448229 2794793943
#> 15 2558496858 2604066412 2565016477
#> 16 2555642463 2605331096 2567932463
#> 17 2602201085 2658558791 2606500772
#> 18 2612594940 2654443004 2619456192
#> 19 2602201085 2658210687 2606199623
#> 20 2656100513 2687997195 2643797853
#> 21 787744785 799617480 796434230
#> 22 128193041 130478045 134228539
#> 23 172510098 176562061 177415324
#> 24 167690047 171175609 169612469
#> 25 139584225 146394447 147789848
#> 26 132638520 137672543 139263125
#> 27 2888466618 2954940822 2939329283
#> 28 2764314712 2812395258 2789576847
#> 29 935378925 940800842 934265699
#> 30 2347473463 2358457505 2363087707
#> 31 2354439258 2361252532 2382933437
#> 32 2348476339 2369170925 2380921277
#> 33 2543153403 2600205495 2619687078
#> 34 98879728 98769409 101168708
#> 35 98721103 98672558 101271756
#> 36 98877615 98765565 101106282
#> 37 98859319 98765181 101104671
#> 38 2401061766 2343704602 2380192130
#> 39 2767805853 2742139752 2744900903
#> 40 1936772629 1959886323 1952049726
#> 41 2200045543 2193775555 2210553254
#> 42 111152503 111752849 112545730
#> 43 132848619 136912391 138986555
#> 44 110498538 111505188 111992300
#> 45 2259099069 2314723838 2276704379
#> 46 2290759845 2298583450 2262446224
#> 47 2336020222 2334650860 2310525845
#> 48 1312207019 1321355041 1339205109
#> 49 1435756128 1457125802 1494151429
#> 50 1376115728 1408995615 1419414555
#> 51 1401522220 1429743715 1454224309
#> 52 1346512674 1355836673 1380364990
#> 53 1355550939 1387706092 1405179451
#> 54 1333973201 1349694686 1372384225
#> 55 3263428366 3265530562 3306913093
#> 56 1709725009 1779195727 1784730121
#> 57 121718493 123006597 123143096
#> 58 121801597 123379647 123239828
#> 59 144307658 148523810 151901455
#> 60 129946309 132533877 132912060
#> 61 129726179 130561724 130735557
#> 62 134676436 134838258 135639326
#> 63 161112616 161985934 162620457
#> 64 187530462 191440498 194622551
#> 65 134763474 138345174 138846811
#> 66 178445968 188314287 195710996
#> 67 167688893 168675545 169493532
#> 68 167150189 170143875 171054983
#> 69 159156963 164318549 166528768
#> 70 136671636 141305693 142009070
#> 71 126629968 128135020 130469792
#> 72 172176200 172252796 171772722
#> 73 174278533 175578975 174315681
#> 74 157074744 160784120 164819663
#> 75 153591873 156335495 159321507
#> 76 18911 18971 18579
#> 77 2100601073 2118797264 2133994969
#> 78 2599018019 2685622156 2659929921
#> 79 2409532297 2436259143 2437129098
#> 80 2418541433 2433753469 2452368848
#> 81 2427645881 2446638921 2435702340
#> 82 1976982886 2047569835 2033482154
#> 83 2313013015 2363186451 2386518443
#> 84 1602413959 1639465295 1672047808
#> 85 1959778845 1987259215 2043864172
#> 86 2347752750 2374494622 2412131416
#> 87 2455479555 2505447773 2539218230
#> 88 2431884804 2452029721 2484989765
#> 89 318947169 318218870 321254128
#> 90 345715212 345136745 350886313
#> 91 342753629 342427370 346840475
#> 92 552648515 546198449 533393725
#> 93 1034592602 1054942638 1059632597
#> 94 1019940994 1043437780 1039178772
#> 95 1007805778 1021229073 1008860690
#> 96 1119974224 1150388536 1144961410
#> 97 1027195562 1059102355 1040315833
#> 98 2682984737 2648329229 2705842117
#> 99 432931840 442578877 440272513
#> 100 1030355303 1015310999 1021542911
#> 101 2737432028 2747497426 2749946075
#> 102 2799924495 2806334149 2835972681
#> 103 2991233804 3026256154 3050689981
#> 104 2367324393 2421766491 2418416827
#> 105 2286392046 2347253820 2319595422
#> 106 2819080196 2845035794 2847780885
#> 107 NA NA NA
#> 108 2833153372 2861605605 2857893341
#> 109 2874271596 2910683893 2677388039
#> 110 2219673405 2231227240 2220159270
#> 111 3056032418 3120476550 3155799998
#> 112 2610132162 2545517319 2638531405
#> 113 2779702403 2822120037 2782576779
#> 114 1996270752 1990106882 1978642989
#> 115 949539211 946028443 948118026
#> 116 1031841579 1030857860 1047215546
#> 117 1078752981 1078412141 1093794615
#> 118 1846940293 1848303870 1855447341
#> 119 2376217313 2370265786 2364897300
#> 120 2494787038 2520868989 2538590322
#> 121 2458234533 2482774613 2487520303
#> 122 2489384085 2513019076 2528988583
#> 123 3473309922 3471243818 3496607150
#> 124 2292375212 2268754574 2312317017
#> 125 1953302322 1968668966 1961706006
#> 126 1916923538 1934297985 1951645558
#> 127 2324485068 2329860714 2324115309
#> 128 2700624267 2772441558 2781630032
#> 129 2700624267 2772441558 2781630032
#> 130 2692721388 2764207696 2792084110
#> 131 1799140943 1835846033 1872786388
#> 132 1952915197 1935521524 1915147904
#> 133 808314917 813891773 816417556
#> 134 1770785324 1773697339 1776674496
#> 135 1770785324 1773697339 1776674496
#> 136 2603210972 2576291490 2662396039
#> 137 698657510 705821645 711324617
#> 138 2395533341 2372527428 2390388070
#> 139 1436453013 1529987302 1603654946
#> 140 2496130500 2537617667 2511058407
#> 141 2548223345 2581852138 2546984533
#> 142 2733465514 2734145383 2730563638
#> 143 2736251686 2734921758 2730411003
#> 144 2733596061 2724481214 2751482570
#> 145 2856727393 2861005038 2879542885
#> 146 2856164724 2860742988 2879195759
#> 147 2989913760 2950865363 3002680243
#> 148 2921691640 2884046111 2927175918
#> 149 2839206740 2846464317 2884327494
#> 150 2861368927 2886532584 2913907429
#> 151 2685654438 2674585640 2698331951
#> 152 797781676 815851404 830381503
#> 153 618860527 634923161 637611525
#> 154 981530108 965836298 989801994
#> 155 3035517506 3068821284 3090961704
#> 156 2961544918 2955145695 2982129430
#> 157 141214489 145943885 146438867
#> 158 2403185101 2400084998 2399832801
#> 159 1814628127 1833405453 1856198532
#> 160 2859311622 2825450586 2877310579
#> 161 2661433343 2675029854 2683641248
#> 162 2666449838 2656594342 2667725476
#> 163 2981878934 2983244323 3015715672
#> 164 2766237546 2804707098 2784783651
#> 165 2424802253 2445415797 2492553649
#> 166 2407632858 2411112765 2450372719
#> 167 2533487328 2532941502 2584908307
#> 168 11813144 11818737 11765849
#> 169 11804154 11816227 11789151
#> 170 11783749 11825681 11763390
#> 171 2511788228 2489280973 2499872779
#> 172 2923702841 2909336213 2918131855
#> 173 1822984931 1757515411 1830188580
#> 174 2220157901 2185152343 2231119347
#> 175 2318801757 2302431943 2339341657
#> 176 773159878 771452852 769852356
#> 177 747701608 751734196 745139758
#> 178 2455392186 2460785927 2437550871
#> 179 2043880242 2047115344 2047894682
#> 180 2302454690 2323697814 2308595246
#> 181 1203403883 1230331999 1221854064
#> 182 1197386133 1222540069 1211134270
#> 183 2456959667 2588347570 2541565433
#> 184 3176599892 3256493714 3227919598
#> 185 311202194 313169619 308718393
#> 186 302936468 303079011 297862502
#> 187 1130967388 1131046294 1123289926
#> 188 2790373154 2790424120 2834642563
#> 189 2132911942 2130041061 2150135387
#> 190 2301453142 2293129920 2301603218
#> 191 1752689361 1792642976 1819529806
#> 192 2026411074 2056164289 2031928682
#> 193 29736 30013 29781
#> 194 2396927657 2416569382 2409515485
#> 195 1267441146 1335258243 1338345938
#> 196 1255630160 1317276654 1326573118
#> 197 1254746674 1316083257 1325429885
#> 198 1285480325 1325351122 1318702951
#> 199 1284917412 1325869926 1325152789
#> eff_genome_size_300bp genome_length rlfs_available
#> 1 2168863899 2299509015 FALSE
#> 2 2073919991 2174259888 FALSE
#> 3 1429423814 1781602899 FALSE
#> 4 1410398964 1799143587 FALSE
#> 5 236816357 287805703 TRUE
#> 6 229341784 264974304 FALSE
#> 7 206347479 213394811 FALSE
#> 8 219173912 502497597 TRUE
#> 9 541755810 715806041 TRUE
#> 10 1193968169 1523986457 FALSE
#> 11 1173652820 1192725744 FALSE
#> 12 2113102628 2431687698 FALSE
#> 13 2355724438 2953622319 FALSE
#> 14 2418357085 3525488607 FALSE
#> 15 2289263563 2902896901 FALSE
#> 16 2289676670 2917974530 FALSE
#> 17 2359642998 2670422299 FALSE
#> 18 2336314274 2981119579 FALSE
#> 19 2359313930 2670044500 FALSE
#> 20 2366195648 2715853792 FALSE
#> 21 663919597 926386587 FALSE
#> 22 108574767 156378573 FALSE
#> 23 159973937 207333000 FALSE
#> 24 157840750 194283334 FALSE
#> 25 130588094 161944676 FALSE
#> 26 126474823 149111736 FALSE
#> 27 2626511325 3029401840 FALSE
#> 28 2566192560 2914958544 FALSE
#> 29 883662526 974498586 FALSE
#> 30 2268493993 2519795863 FALSE
#> 31 2260205407 2531673953 FALSE
#> 32 2261321008 2410976875 TRUE
#> 33 2448522968 2723219641 FALSE
#> 34 95379959 100286070 TRUE
#> 35 95377181 100286401 TRUE
#> 36 95321203 100291769 FALSE
#> 37 95321203 100281426 TRUE
#> 38 2297087083 2464367180 FALSE
#> 39 2632870400 2789656328 FALSE
#> 40 1764807994 2458927620 FALSE
#> 41 2010502015 2589745704 FALSE
#> 42 107625445 116731843 FALSE
#> 43 116782141 173499994 TRUE
#> 44 107049762 115227500 TRUE
#> 45 2195195239 2360146428 FALSE
#> 46 2215062296 2399786748 FALSE
#> 47 2206700714 2358167390 FALSE
#> 48 1159419084 1371719383 TRUE
#> 49 1226095927 1679203469 TRUE
#> 50 1174846602 1644032962 FALSE
#> 51 1198756316 1774660131 FALSE
#> 52 1164755104 1440582308 FALSE
#> 53 1176783771 1512402306 FALSE
#> 54 1173009214 1412464843 TRUE
#> 55 2945869377 3631522711 FALSE
#> 56 1514789497 2158502098 FALSE
#> 57 118591930 129323838 FALSE
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