Plots the results of the noise analysis in noiseAnalyze. Creates a fingerprint plot like those developed by Diaz et al, 2012 and those provided by deepTools.
plotFingerprint(object)Arguments
- object
An RLRanges object with noiseAnalyze already run.
Value
A ggplot object. See also ggplot2::ggplot.
noiseComparisonPlot
A plot showing the noise analysis results from the user-supplied sample compared to similar samples from RLBase.
Details
The term "Fingerprint plot" comes from deepTools.
Examples
# Example RLRanges dataset with analyzeRLFS() already run.
rlr <- readRDS(system.file("extdata", "rlrsmall.rds", package = "RLSeq"))
# Plot RLFS res
plotFingerprint(rlr)
#> Warning: Removed 984 row(s) containing missing values (geom_path).
