A collection of random genomic windows for use with noiseAnalyze. See the
data-raw/genome_masks.R script for the processing steps.
randomWindowsAn object of class list of length 3.
randomWindows is a named list of tbl objects containing ~1000 random
genomic regions. The names are the genomes to which the regions correspond.
Columns (mirrors bed3 format).
chrom - the chromosome in UCSC format
start - the starting position
end - the end position
randomWindows
#> $mm10
#> # A tibble: 1,000 × 3
#> chrom start end
#> <chr> <int> <int>
#> 1 chr1 48578 49578
#> 2 chr1 1939982 1940982
#> 3 chr1 2712979 2713979
#> 4 chr1 3554553 3555553
#> 5 chr1 4524757 4525757
#> 6 chr1 6759610 6760610
#> 7 chr1 7502531 7503531
#> 8 chr1 8046629 8047629
#> 9 chr1 9032815 9033815
#> 10 chr1 11530044 11531044
#> # … with 990 more rows
#> # ℹ Use `print(n = ...)` to see more rows
#>
#> $hg38
#> # A tibble: 984 × 3
#> chrom start end
#> <chr> <int> <int>
#> 1 chr1 60009 61009
#> 2 chr1 2396448 2397448
#> 3 chr1 3351327 3352327
#> 4 chr1 3950461 3951461
#> 5 chr1 4390919 4391919
#> 6 chr1 5589406 5590406
#> 7 chr1 8350107 8351107
#> 8 chr1 9811405 9812405
#> 9 chr1 9939954 9940954
#> 10 chr1 11158183 11159183
#> # … with 974 more rows
#> # ℹ Use `print(n = ...)` to see more rows
#>
#> $hg19
#> # A tibble: 999 × 3
#> chrom start end
#> <chr> <int> <int>
#> 1 chr1 60009 61009
#> 2 chr1 2396448 2397448
#> 3 chr1 2738078 2739078
#> 4 chr1 3557198 3558198
#> 5 chr1 4390919 4391919
#> 6 chr1 5589406 5590406
#> 7 chr1 9811405 9812405
#> 8 chr1 9939954 9940954
#> 9 chr1 11158183 11159183
#> 10 chr1 13045451 13046451
#> # … with 989 more rows
#> # ℹ Use `print(n = ...)` to see more rows
#>